31 May 2009

What can you even say to this?

Via Pharyngula: Abortion provider George Tiller was fatally shot this morning, in the lobby of his church. Police have a suspect in custody, according Twitter updates from the Wichita Eagle. Perhaps they caught the fellow while he wandered lost through a nearby forest, inspecting every individual tree for moss.

Biologists aren't the least-religious academics

At least, that's according to a survey cited by epiphenom. The least-religious professors at U.S. universities are, in fact, the psychologists -- almost 50% are atheists, and about another 10% are agnostic. Biologists are close behind, actually, but are more likely to be agnostic (about 35%) than out-and-out atheist (about 25%).

30 May 2009

How fast do ecosystems recover from disturbance? It's complicated.

ResearchBlogging.orgIn the 21st century, human activity promises to impact the natural world on an unprecedented scale. In order to decide where to focus conservation effort, one thing we need to know is how permanent the damage from a forest clear-cut or a collapsed fishery actually is. A paper in this week's PLoS ONE looks at natural systems' ability to recover after human and natural disturbances, and the authors say the results are hopeful. I'm not so sure.


A clearcut.
Photo by : Damien.
The authors, Jones and Schmitz, assemble a meta-dataset of ecological studies published from 1910 to 2008, all examining the recovery of either ecosytem functions (like total nutrient cycling rates) or plant or animal diversity following disturbances as diverse as hurricanes and oil spills. They then calculated the proportion of measured variables that recovered, or failed to, within the period studied by each paper in the dataset, how much the measured variables had been altered by the disturbance, and how long it took before they returned to their pre-disturbance state.

The results are complicated, to say the least. For example, here's Figure 2, which charts the times to recovery for variables measuring animal community recovery (black bars), ecosystem function (white bars) or plant community (gray bars), broken down by ecosystem type in the top panel, and by disturbance type in the bottom panel:

The authors' conclusion? There is "no discernable pattern." Which I can't really dispute -- recovery times look highly idiosyncratic. An ANOVA performed on the data finds significant effects of ecosystem type and disturbance type, but what does that tell us? Different ecosystems recover differently. Forests take the longest to recover, which makes sense given that trees grow slowly, and succession from clearcut to mature forest can take centuries. Similarly, ecosystems experiencing multiple types of disturbance took the longest to recover.

Of the ecosystems that do recover, the authors point out, recovery occurs comparatively rapidly:
Among studies reporting recovery for any variable, the average recovery time was at most 42 years (for forest ecosystems) and typically much less (on the order of 10 years) when recovery was examined by ecosystem. When examined by perturbation type, the average recovery time was no more than 56 years (for systems undergoing multiple interacting perturbations) and typically was 20 years or less ...
The authors then perform a regression of the strength of disturbance (i.e., how much the measured variables changed due to disturbance) against the time needed for recovery. The data set is necessarily small, because not many studies follow an ecosystem all the way from disturbance to complete recovery, and they find a significant effect of disturbance strength on recovery time mostly because of a single data point.

Jones and Schmitz conclude from this dataset that ecosystem recovery from human disturbance is frequently possible within human lifetimes, especially if we put in the effort for restoration. I'll buy that; but I think the more important lesson to draw from this paper is that, after a century of watching the natural world respond to human activity, we still can't predict what the results of our actions will be. It shouldn't need saying, but when we fiddle with our life-support systems, we must proceed cautiously.

Reference

Jones, H., & Schmitz, O. (2009). Rapid recovery of damaged ecosystems PLoS ONE, 4 (5) DOI: 10.1371/journal.pone.0005653

29 May 2009

Oh, hey

So I just noticed that this was my 50th post through the Research Blogging content aggregator. I joined Research Blogging last July, and it's been nothing but good for traffic to D&T -- and maybe more importantly it's one of the first places I check when I want to see what other scientists are blogging about.

I've now tagged every piece submitted through the system, and will continue to do so for organizational convenience. It's variable output, quality-wise, but pretty representative of my free-time science reading, which is what I aim for my scientific blogging to be.

In social courtship, it pays to be a good wingman

ResearchBlogging.orgThe search for a mate is traditionally a selfish enterprise. After all, the ultimate goal is reproduction, and -- barring any effect of kin selection -- natural selection only cares about how many babies you make, not how many you help to make. This is fundamentally a biological question, though, and if there's a universal rule in biology, it's that nature is good at making exceptions.

One such exception is the wire-tailed manakin. A study in the latest Proceedings of the Royal Society seems to show that male manakins can boost their own mating success by helping other males attract mates [$-a]. Manakins are a family of brightly-colored neotropical birds, and the males of many manakin species attract females by putting on dancing displays, as seen in this video:



(I seem to recall that there's also some excellent footage of manakin dancing in David Attenborough's The Life of Birds.)

To dance for females, male manakins gather at locations called "leks," where most try to establish a small territory to perform. Among wire-tailed manakins, though, some males will team up to dance -- presumably because if one brightly-colored male jumping around on a branch is attention-grabbing, two or three are even more so. But in these "coordinated displays," one performer, the socially dominant one, is most likely to mate with the females who like the performance. So what's in it for the other guys?

There seem to be two possible (though not mutually exclusive) explanations [$-a]: (1) that the mate-attracting dancing does double duty to establish social dominance relationships among males, and (2) that, even if it wins fewer mates than the "lead" role, being a supporting player in a successful cooperative display means better mating prospects than trying to go it alone. To try and disentangle these two possibilities, the new study's authors followed the behavior of wire-tailed manakins at several leks for four years, building a "social network" of male-male cooperation at the leks and counting the offspring each male bird by taking DNA fingerprints of the males and of newly-hatched chicks in the nests of females who attended each lek.

Although the most reproductively successful males at each lek were all territorial, defending their own spot at the lek and dominating other males who joined in the display on that territory, non-territorial "floater" males tended to make more babies if they joined in more displays. In fact, the number of offspring produced was best predicted by the number of cooperative display interactions in which a male joined, whether he had his own territory or not. This complements an earlier study by the same group [$-a], which showed that a male's "tenure" -- how long he had been dominant in a territory within a lek -- was the best predictor of mating success, but that a male's rise through the social hierarchy at a lek was facilitated by cooperative interactions with other males.

In short, male manakins seem to help each other in mating displays for essentially selfish reasons. Being a supporting dancer has a coattail effect, earning more mates than trying to go solo, and it helps young males improve their social status toward the day when they can establish their own display territory.

References

Prum, R.O. (1994). Phylogenetic analysis of the evolution of alternative social behavior in the manakins (Aves: Pipridae). Evolution, 48, 1657-75 DOI: http://www.jstor.org/stable/2410255

Ryder, T., McDonald, D., Blake, J., Parker, P., & Loiselle, B. (2008). Social networks in the lek-mating wire-tailed manakin (Pipra filicauda) Proc.R. Soc. B, 275 (1641), 1367-74 DOI: 10.1098/rspb.2008.0205

Ryder, T., Parker, P., Blake, J., & Loiselle, B. (2009). It takes two to tango: reproductive skew and social correlates of male mating success in a lek-breeding bird Proc. R. Soc. B, 276 (1666), 2377-84 DOI: 10.1098/rspb.2009.0208

27 May 2009

Adulthood

By age 25, it's time to grow up.
19. Take care of yourself. If you are sick, visit a doctor. If you are sad, visit a shrink or talk to a friend. If you are unhappy in love, break up. If you are fed up with how you look, buy a new shirt or stop eating cheese. If you have a problem, try to fix it. Many problems are knotty and need a lot of talking through, or time to resolve, but after a few months of all complaining and no fixing, those around you will begin to wonder if you don't enjoy the problems for the attention they bring you. Venting is fine; inertia coupled with pouting is not. Bored? Read a magazine. Mad at someone? Say so — to them. Change is hard; that's too bad. Effort counts. Make one. Your mommy's shift is over.
The whole list is well worth reading; it crystallizes a lot of what I sort of generally sensed about the difference between me and the undergrads, when I arrived on campus to start work on the ol' Ph.D. Via kottke.

26 May 2009

Excuses, excuses

Via the Slate Gabfest on Facebook: a great long profile of Andrew Sullivan. I started reading the Daily Dish regularly during the presidential campaign last fall, and I still check it multiple times a week; I can identify with Sullivan's attempts to reconcile his (apparent) internal contradictions. What struck me, though, was the piece's account of what you might call Sullivan's "neoconservative period," his reaction to the attacks of 11 September, 2001:
“I experienced 9/11 very personally,” he says. “The jihadists attacked my dream, my place—I felt like I had been beaten or raped. I succumbed to the fear a lot of us felt—panic really—about this country being in mortal danger. And neoconservatism seemed like the only ideology on the shelf with a plan for how to react immediately, and I turned to it.”

Having voted for George Bush in 2000, he now became one of his most militant supporters, urging him to invade not just Afghanistan but Iraq, in charged and extreme language. His blog posts from that time are quite startling to read now—more expressions of rage and grief than political analysis.
Sullivan is hardly the only person in American politics who reacted like this. (I recall just about falling out of my chair when a commentator on NPR proposed that a nuclear strike would be a good response to the destruction of the World Trade Center.) And Sullivan has clearly come to his senses and now strongly repudiates the positions he took during that period.

But all that said, I'm tired of this narrative about post-9/11 panic. It feels like excuse-making, and it implies that the near-immediate search for a retaliatory target and the fearmongering push for the invasion of Iraq were natural, understandable responses to the attacks on the WTC and the Pentagon. You know what? They weren't. Panic and fear and anger may be natural, but acting on them is stupid. If we haven't learned that lesson from the Bush Administration, then we'll almost certainly repeat the same mistakes in the aftermath of the next terrorist attack on U.S. soil. And I'll be frank -- the prospect of re-making those mistakes scares me more than whatever that attack may turn out to be.

24 May 2009

Evolution 2009: How best to go social?

Evolution 2009The Evolution 2009 meetings are less than a month away. Now is probably the last chance to assess what online presence and utilities the meetings will have.

Right now, we have the meeting website, with a page for bloggy stuff -- and it's kind of a mess at the moment, with my hastily scribbled explanation about the power of TEH INTERNETS and a list of the handful of science blogs (this one included) that are displaying an Evolution2009 badge and will have a contributor at the meetings. We've also got the Evolution2009 Twitter feed. What more could be done with this space, both to improve the meetings for participants and to open them out to the public? I have two ideas:
  • A blog carnival. I've participated in several blog carnivals in the last few months, including the Carnival of Evolution and Berry-go-Round. The Blog Carnival utility seems like a good way to round up posts on a given topic, and posting submissions to the existing "blogging" page seems like a logical way to show what participating bloggers are writing about the meetings.
  • A FriendFeed group. Following the approach used at 2008 meeting of the International Society for Computational Biology, we can open an aggregate feed of twittering, blog posts, and other online reactions to the meeting. In fact, I've set it up here already. I have two questions/qualms about this:
    • (1) Should such a group be open or invitation only? Maybe I'm paranoid, but I do worry about hijacking by, e.g., creationists.
    • (2) More importantly, how many people would actually contribute? The ISCB had "a core group of ten contributors" out of 1600 attendees. The Twitter feed has, as of the time of writing, 68 followers, not all of whom are individuals, and many of whom are not active users of Twitter, but rather seemed to have subscribed just to get the latest news. (Which is fine! If that's all the feed achieves, it's been useful.) So how many folks would actually Twitter during the meetings?
Anyway, I'm going to put the word out over the Twitter feed -- I'd love input on both of the above points, as well as suggestions for other utilities or approaches.

When the going gets tough, C. elegans gets sexy

ResearchBlogging.orgThe trouble with sex, from an evolutionary perspective, is that it's expensive. Not just in terms of the efforts a sexually-reproducing organism has to go through to secure a mate; every offspring produced by sexual reproduction bears half the genome of each of its parents, compared to an asexual offspring, which bears a complete copy of its only parent's genome. So, in terms of natural selection, an asexual critter gains twice as much reproductive fitness for each offspring it produces -- asexual critters should overrun sexual competitors.


C. elegans tagged with gfp.
Photo by derPlau.
And yet they don't. Sex is widespread in the animal kingdom, and common in the plant kingdom (although many plants can switch between sexual and asexual reproductive strategies). Many explanations have been proposed for this quandary; most of them have to do with the idea that sometimes it's useful to mix your genome with someone else's. The current front-runner hypothesis is that sex basically helps to separate useful genes from damaging ones [PDF], making sexual offspring more fit, on average. A different (but not mutually exclusive) possibility is that by mixing up genomes, sex can help generate the genetic variation necessary for a population to evolve in response to environmental stress. This might explain a discovery reported in this month's issue of Evolution: that stressful conditions trigger the normally hermaphroditic nematode Caenorhabditis elegans to begin reproducing sexually [$-a].

The study's authors subjected three experimental lineages of C. elegans to stress -- starvation -- triggering the worms to produce semi-dormant larvae called "dauer." They then relieved the stress by transferring the population to a new food source. Some experimental treatments were kept well-fed after one period of dauer; others were repeatedly starved. Two of the three experimental lines responded to repeated episodes of dauer by producing male offspring instead of hermaphrodites.

Some of this effect was due to males' better ability to survive dauer state than hermaphrodites. A large portion was because hermaphrodites became more likely to mate with males (with a possibility to produce male offspring) following dauer, though. This kind of facultative sex takes the best of asexual and sexual reproduction -- the twofold fitness benefit of asexual reproduction most of the time; and the improved response to natural selection associated with sex in stressful conditions, when it's needed most.

References

Keightley, P., & Otto, S. (2006). Interference among deleterious mutations favours sex and recombination in finite populations Nature, 443 (7107), 89-92 DOI: 10.1038/nature05049

Morran, L., Cappy, B., Anderson, J., & Phillips, P. (2009). Sexual partners for the stressed: Facultative outcrossing in the self-fertilizing nematode Caenohabditis elegans.
Evolution, 63 (6), 1473-82 DOI: 10.1111/j.1558-5646.2009.00652.x

21 May 2009

Mennonites in pink

Pink Menno Campaign is organizing people to support broader (and officially-sanctioned) inclusion of LGBTQ people in the Mennonite Church by wearing pink at the upcoming biennial convention of Mennonite Church USA.

Mennonites are in a slightly unusual position w/r/t sexual orientation -- the Confession of Faith in a Mennonite Perspective accepts only heterosexual marriage -- but the CoF is more a descriptive than a prescriptive document, and because MCUSA lacks some sort of centralized doctrinal enforcement, a few individual congregations do welcome LGBTQ folks and even perform same-sex marriage ceremonies. Sometimes such congregations and/or their pastors are "disciplined" in various ways by the local-level church authorities that can do such things, and the results are never happy.

I thought it was a big deal when, as a delegate at the last MCUSA conference, I was involved in preparing a statement on behalf of young Mennos that included a very brief nod to broader inclusion; much more recently, a group of Mennonite pastors signed an open letter to the church calling for an end to the exclusion of LGBTQ folks. (An article in Mennonite Weekly Review covers both the letter and its context.) Progress? Hard to say. A Delegate Assembly full of pink t-shirts is a mighty appealing image, though.

I know what I'm doing this summer.

Re-reading Infinite Jest, footnotes and experimental film references and bizarre medically-nomenclatured anthropoid malformations and all. Via kottke, natch.*

*Actually, I'm already well into the re-read -- I'd decided to do it following DFW's tragic death last fall, and hadn't actually started till a couple weeks ago. But a head start probably won't hurt.

Poverty doesn't come cheap

In the mental_floss morning cup o' links: The Washington Post has an interesting piece about the cost of poverty. Not "cost of poverty" as in "tax dollars spent on the indigent," but as in the poor often pay more for basic necessities.

Some of it is familiar if infuriating, like the insane, evil fees for payday loans (an effective annual interest rate of 806 percent!) and check cashing services that are the only option for people without bank accounts. Some of it is not surprising if you've lived in a not-quite-yet-gentrified urban neighborhood, like the increased prices at urban supermarkets and smaller shops. And a lot of it just makes sad sense when you think about it -- when public transportation is your only option, traveling in search of better prices on milk and bologna isn't really possible.

If middle-class folks, who are used to getting a response when they complain, had to put up with unreasonable markups on breakfast cereal and effectively useless public transit, something would get done. Maybe more intentionally mixed-income neighborhoods would help.

Getting away from it all: Why are invasive species invasive?

ResearchBlogging.orgWhen humans move from place to place, we almost always bring other organisms with us. Sometimes it's intentional -- domestic animals carried along with Polynesian colonists, for instance. Just as often, it's accidental, as with mice stowing away on Viking longships. A lot of these introduced species have done so well in their new habitats that they become invasive, outcompeting natives and disrupting local ecosystem processes. But the species that go crazy-invasive -- the cane toads and the purple loosestrife -- are probably only the very successful subset of the species that hitch rides in cargo holds and ballast tanks. What sets the dangerously successful invasive species apart from others?


Purple loosestrife, introduced
from Europe, now common in East
Coast wetlands.
Photo by Muffet.
A new dataset published in last week's PNAS suggests that it may be an interaction between available resources in a new habitat and a lack of compatible pathogens [$-a]. This is an amalgam of two hypothesized causes for successful invasion: access to new resources, and escape from antagonistic species. Focusing on European plant species that have successfully invaded North America, the authors, Blumenthal et al., assembled records of viral and fungal infections on each plant species in its native range, and in North America. They classified the plant species based on the habitats each occupies -- wet vs. dry, nitrogen-rich vs. -poor -- and on whether the plants tended to grow slowly or rapidly. This is because plant species adapted to rich, wet environments are generally thought to evolve fewer defenses against infection and herbivores; they can "afford" to grow new tissue instead of fight to keep it.


Garlic mustard, another invasive
from Europe.
Photo by clspeace.
If resource availability interacts with freedom from infectious agents to spur a successful invasion, then invasive plants adapted to rich conditions should tend to host more pathogens in their home ranges than they do in their introduced range; and this difference should be less pronounced in invasive plants adapted to dry, resource-poor conditions. This is exactly what the analysis found -- plants adapted to richer habitats saw a larger reduction in the number of pathogen species attacking them in their new ranges than plants adapted to less-productive conditions.

This is a valuable result for its basic application -- helping to predict which introduced species are likely to become invasive, and target them for eradication efforts before they become well-established. But it also provides us with an insight into how evolution works. Many authors, particularly G.G. Simpson and Dolph Schluter, have described ecological conditions that set the stage for adaptive radiation -- the rapid diversification of a lineage into many species -- which sound a lot like the "ecological release" that invasive species seem to experience.

Rapid evolutionary diversification may be triggered by the evolution of a key innovation; by colonization of a new, empty habitat; or the removal of antagonistic species (usually by their extinction). These three classes of conditions are closely related, and they can be mimicked, or even replicated, when humans move species to new habitats [$-a]. Blumenthal et al. suggest, for instance, that species invasions entail both colonization of a new habitat and escape from pathogens. This is a broad observation; a good next step would be to directly compare natural selection acting on invasive plants in their native and introduced ranges. Through day-to-day processes like this, the specific ecology of a species can ultimately shape its evolutionary fate.

Reference

Blumenthal, D., Mitchell, C., Pysek, P., & Jarosik, V. (2009). Synergy between pathogen release and resource availability in plant invasion. Proc.Nat. Acad. Sci. USA, 106 (19), 7899-904 DOI: 10.1073/pnas.0812607106

Vellend, M., Harmon, L., Lockwood, J., Mayfield, M., Hughes, A., Wares, J., & Sax, D. (2007). Effects of exotic species on evolutionary diversification. Trends Ecol. & Evol., 22 (9), 481-8 DOI: 10.1016/j.tree.2007.02.017

17 May 2009

Seed dispersal by ants: A lousy way to travel, a good way to diversify

ResearchBlogging.orgNew in the always open-access PLoS One: turns out that a great way to make new species, if you're a plant, is to have your seeds dispersed by ants. This is because ants aren't very good at seed dispersal.

Seed dispersal by ants, or myrmecochory, works very much like dispersal by fruit-eating birds and mammals: ant-dispersed seeds typically have a fatty attachment, called an elaiosome, that looks tasty to ants. Ants collect elaiosome-bearing seeds, bring them back to their nest, pry off the tasty bit, and then discard the rest of the seed. This leaves the seed safely underground in an ant-midden, ready to germinate -- a great way to dodge seed-eating critters and avoid competition from its parent plant and siblings [$-a].


Bloodroot seeds, with ant-attracting
elaisomes.
Photo by cotinis.
I didn't learn about myrmecochory until after I'd finished undergrad -- which is surprising, because it was going on under right my nose every time I went out into the Appalachian woods near campus. Lots of wildflowers [$-a] have ant-dispersed seeds, including bloodroot, touch-me-not, and good old trillium. It's an extremely popular dispersal mechanism, having evolved independently multiple times on every continent except Antarctica. Really, me not knowing about myrmecochory is kind of like not knowing about fruit!

Ant dispersal is also associated with increased species diversity. In the new article, Lengyel et al. use a classic analysis method called sister group comparison to test the hypothesis that ant-dispersed plant groups contain more species than the most closely-related plant group. And they do, by a long way: on average, myrmecochorous groups contain twice as many species as their non-myrmecochorous sister groups. Why is this? As the authors conclude, it's probably a side consequence of ant dispersal -- ants don't move seeds very far from where they collect them.
Recent evidence from genetic studies shows that limited seed dispersal in myrmecochory can lead to strong genetic structure within populations even at spatial scales as small as a few meters. The failure of myrmecochores to maintain gene flow across barriers may lead to reproductive isolation of sub-populations, which may facilitate speciation. [In-text references omitted.]
So myrmecochorous plants, like Appalachian salamanders [$-a] and tropical white-eyes [$-a], make lots of new species not because their unique characteristics give them some adaptive advantage (although, to be sure, there are advantages to ant dispersal), but because ants do a lousy job moving seeds between populations, leaving them free to follow their own evolutionary trajectories.

Lengyel et al. argue that myrmecochory is a key innovation, a trait that helps a group of organisms spread and diversify in the process evolutionary biologists call adaptive radiation. Based on their results, I have to agree -- ant dispersal is strongly associated with evolutionary diversification. But the speciation that myrmecochory promotes is an accident, a side effect. We often think of key innovations promoting speciation by adaptive means, by allowing one group of species to outcompete others. Clearly, however, a key innovation can also be a trait that makes the accident of speciation a little more likely.

References

Beattie, A.J., & Culver, D.C. (1981). The guild of myrmecochores in the herbaceous flora of West Virginia forests. Ecology, 62, 107-15 DOI: http://www.jstor.org/pss/1936674

Giladi, I. (2006). Choosing benefits or partners: a review of the evidence for the evolution of myrmecochory. Oikos, 112 (3), 481-92 DOI: 10.1111/j.0030-1299.2006.14258.x

Kozak, K., Weisrock, D., & Larson, A. (2006). Rapid lineage accumulation in a non-adaptive radiation: phylogenetic analysis of diversification rates in eastern North American woodland salamanders (Plethodontidae: Plethodon). Proc. R. Soc. B, 273 (1586), 539-46 DOI: 10.1098/rspb.2005.3326

Lengyel, S., Gove, A., Latimer, A., Majer, J., & Dunn, R. (2009). Ants sow the seeds of global diversification in flowering plants. PLoS ONE, 4 (5) DOI: 10.1371/journal.pone.0005480

Moyle, R., Filardi, C., Smith, C., & Diamond, J. (2009). Explosive Pleistocene diversification and hemispheric expansion of a "great speciator." Proc. Nat. Acad. Sci. USA, 106 (6), 1863-8 DOI: 10.1073/pnas.0809861105

16 May 2009

Evolution 2009: Eugenie Scott to receive first-ever Gould Award

Evolution 2009First real news item for Evolution 2009: The meetings will open Friday night with a public lecture by Eugenie Scott, who is receiving the first Gould Award for Public Outreach from SSE in recognition of her leadership at the National Center for Science Education.

What's really exciting is that we're going to open the event to the general public in cyberspace, too -- video of the lecture will be streamed online at the meeting website as soon as the UI video production center can put it together (probably the following Monday). If you won't be at the meetings in person, watch the Evolution2009 twitter feed for notification that the video's up.

11 May 2009

Snowed under

What's it take to stop me spending time on blogging? Turns out two or three major deadlines, end-of-semester grading madness, and an upcoming conference on campus do the trick. Shall be posting more again when I reduce the in-box pile a little.


Photo by jby.

04 May 2009

Science versus creationism: To debate or not to "debate"?

A visiting creationist dared biologists at U.C. Davis to debate him -- and even bet $250,000 no one could show "any empirical evidence for macro evolution [sic]." Jonathan Eisen turned him down:
Discussing creationism - fine. Discussing criticism of evolutionary hypotheses - fine. Having a reasonable panel discussion of science and religion - fine. Meeting with creationists to discuss their ideas about evolution - ok too. But engaging in a "debate" and thus even for a second implying that creationism stands on the same ground as evolution - completely ludicrous.
There's a good discussion emerging below the post; but the consensus seems to be do not feed the trolls. It's a hard position to take -- it certainly goes against my own Aspergers-oid need to refute obvious nonsense when I hear it -- but I've rarely seen such events work out well.

Picture a local scientist who maybe thinks about creationism a couple times a year "debating" some nut who considers this his life's work. Advantage: nut.

Consider further that the audience is overwhelmingly on the nut's side -- and, indeed, are there to have their beliefs confirmed -- so that the nut has no need to make a coherent argument and can instead focus on scoring rhetorical/ presentational points. Advantage: nut.

Finally, recall that scientific knowledge is necessarily tentative and complex, and a good scientist will have to acknowledge that there are things we don't know about the history of life on Earth; whereas the nut has an (allegedly) simple and comprehensive story. Advantage: nut.

Of course, ask the two of them do do actual science, develop an answer to an empirical question beyond "because God wanted it to be that way" -- then advantage: scientist. But that's not what a formal debate is.

03 May 2009

The middle-class President

I'm working through the great New York Times Magazine interview with President Obama, between grading and lit-searching. And something struck me in this section on education. (A question by the interviewer, David Leonhardt, is in italics as in the original.):
My grandmother never got a college degree. ... She went to work as a secretary. But she was able to become a vice president at a bank partly because her high-school education was rigorous enough that she could communicate and analyze information in a way that, frankly, a bunch of college kids in many parts of the country can’t. She could write —

Today, you mean?

Today. She could write a better letter than many of my — I won’t say “many,” but a number of my former students at the University of Chicago Law School. So part of the function of a high-school degree or a community-college degree is credentialing, right? It allows employers in a quick way to sort through who’s got the skills and who doesn’t. But part of the problem that we’ve got right now is that what it means to have graduated from high school, what it means to have graduated from a two-year college or a four-year college is not always as clear as it was several years ago.
There's something awfully comforting about a President who (1) has a personal connection to a world where higher education is a genuine luxury and (2) has first-hand knowledge of the product of modern American education. Quite apart from any objections I had to his policy positions, I can't imagine the previous President saying anything like this -- his family has been assured of college degrees for generations, and he never had the opportunity (or, presumably, the inclination) to critically evaluate law students' writing. I don't necessarily mean that as a criticism of the former President; but now that we have Obama, it seems astonishing that this sort of contact with real Americans' experience isn't considered more important as a qualification for the Presidency.

01 May 2009

Carnival of Evolution #11 at Oh, For the Love of Science


The 11th monthly Carnival of Evolution is up at Oh, For the Love of Science. Following Miriam Goldstein's lead from last month, there's a cute narrative framing for a long list of interesting posts, ranging from natural history to science education strategies. Lots to read in between undergrad research papers this weekend!

Berry Go Round #16 at Quiche Morraine

The 16th edition botanical blog carnival Berry Go Round is now online at Quiche Morraine, with posts on yuccas and ocotillo, the evolutionary origins of land plants, truffle hunting - and my own recent piece on the possible breakdown of an ant-plant mutualism. Check it out!


Photo by jby.

Why are there so many weevils? Coevolution, maybe.

ResearchBlogging.orgAsked what attributes of the Creator were manifest in the natural world, the 20th-century biologist J.B.S. Haldane is said to have replied, "an inordinate fondness for beetles." Beetles are, indeed, the most diverse group of animals on earth, accounting for something less than 40 percent out of five to ten million arthropod species, according to one estimate [PDF]. Naturally, evolutionary biologists would like very much to know how there came to be so many beetles* -- and a new paper in this week's PNAS proposes to answer this question for the largest beetle groups, the weevils.

It seems unlikely to be a coincidence that beetles are widely involved in interactions with the most diverse group of land plants, the angiosperms. In a now-classic 1998 paper, which took Haldane's apocryphal quip as its title, Brian Farrell presented good circumstantial evidence that living and feeding on flowering plants is associated with beetle diversity. Farrell compared the number of species in groups of angiosperm-feeding beetles with the number of species in closely-related groups of non-angiosperm-feeders, and found that angiosperm-feeding groups were more diverse by orders of magnitude [$-a].





A sample of weevil diversity
Photos by Charles Haynes,
janerc, nutmeg66, and
rizalis Malaysian Macro Team.
Interactions between beetles and their host plants could lead to hyper-diversity in two ways. The evolution of new plant defenses and herbivore counter-defenses could generate alternating cycles of diversification in each interacting group [PDF]. Under this process, diversification doesn't really happen because of reciprocal natural selection between plant and herbivore -- it occurs when plants "escape" their herbivores by virtue of a new defense mechanism, and when herbivores exploit a new food resource made available by innovative counter-defenses. Alternatively, plants and beetles might diversify more simultaneously, with natural selection from plants' defenses actually driving the speciation of the insect populations that eat them, and vice-versa.

The new paper, on which Farrell is senior author, attempts to distinguish between these two possible scenarios [$-a] using a new phylogeny of the Curculionoidea, the superfamily of beetles more commonly known as weevils. Weevils are distinguished by the rostrum, a noselike appendage they use in feeding -- and the estimated 220,000 weevil species feed on an enormous array of plant species. Using DNA sequence data, the paper's authors reconstructed the evolutionary relationships between 135 weevil genera. They then calibrated the resulting evolutionary tree using the known dates of fossil weevils, so that they could compare the dates of origin of major weevil groups to the history of angiosperm diversification.

Based on this analysis, the oldest weevil groups had their origin millions of years before the first flowering plants. Many of the extant species in these groups still feed on gymnosperms, which predate flowering plants. The most diverse weevil families, which feed on angiosperms, did not emerge until well after the first flowering plants appear in the fossil record, and may not have diversified until angiosperms became the dominant land plants. This lag suggests that, at least on a very broad time scale, weevils diversified because of angiosperm diversity, but probably did not contribute much to creating that diversity:
Thus, the extraordinary taxonomic diversity of weevils appears to have been mediated predominantly by the presence of susceptible, abundant, and diverse host resources, and the ability of weevils to use those resources, rather than by the evolution of host taxa themselves.
In the strictest sense, then, it seems that coevolution isn't responsible for weevil diversity -- yet it is hard to conclude much from results at this broad scale. As weevils took advantage of the "ecological opportunity" created by angiosperm diversity, they would have created myriad opportunities for reciprocal natural selection. Patterns of strict-sense coevolution following the initial colonization of angiosperms may only be apparent over shorter time spans.

References

Ehrlich, P.R., & Raven, P.H. (1964). Butterflies and plants: A study in coevolution Evolution, 18, 586-608 DOI: http://www.jstor.org/stable/2406212

Farrell, B. (1998). "Inordinate Fondness" explained: Why are there so many beetles? Science, 281 (5376), 555-9 DOI: 10.1126/science.281.5376.555

McKenna, D., Sequeira, A., Marvaldi, A., & Farrell, B. (2009). Temporal lags and overlap in the diversification of weevils and flowering plants PNAS, 106 (17), 7083-8 DOI: 10.1073/pnas.0810618106

Ødegaard, F. (2000). How many species of arthropods? Erwin's estimate revised Biol. J. of the Linn. Soc., 71 (4), 583-97 DOI: 10.1111/j.1095-8312.2000.tb01279.x

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* Apart, that is, from the untestable and ultimately unknowable preferences of any putative Creator.